Prototype 5 is the largest update since my original post adding all sorts of new content!

Prototype 5 Features: 

• Added new rooms
  • The hall has been added. The hall is where your Sojourns live.
  • The Workshop has been added. You may upgrade your ship or repair salvaged items here.
• May upgrade your ship through construction
  
  • You may now build houses to increase your fleet's housing.
  • You may now build farms to increase your fleet's food production
  • You may now upgrade your salvage claw to recover more items.

• Revised population
  •  Your population is now reflected by NPCs called Sojourns.
  •  A new Sojourn is spawned every couple minutes based on how well they are feed.
• Sojourns added
  • Your Sojourns may be found wandering around the Hall.
  • Each Sojourn has physical needs (food and housing) as well as a faith mod.

• Faith Bar Added
  • The total faith of your fleet is displayed in the hall. This number is based on each Sojourn's faith mod.
• Revised tutorial 
  • Added section on population, construction, Sojourn needs, and fleet faith.
  • Clarified older elements such as fleet orders. 
•  Popup added when the fleet experiences a population growth or oil shortage.  
• Revised Fleet Supplies